Software packages available for gene expression analysis, categorised by package format as either enterprise-wide, software for desktop use, or useful websites
| Company | Software | URL |
|---|---|---|
| A growing appreciation of the microarray results has led to the creation of public repositories for microarray data. More information on microarray databases is given in reference 13. | ||
| Enterprise-wide | ||
| GeneData | Expressionist | www.genedata.com |
| Informax | Genomax | www.informaxinc.com |
| LION Bioscience | ArrayScout | www.lionbioscience.com |
| NetGenics | Synergy | www.netgenics.com |
| Rosetta Inpharmatics | Rosetta resolver | www.rii.com |
| Desktop | ||
| Biodiscovery | Genesight | www.biodiscovery.com |
| Silicon Genetics | Genespring | www.sigenetics.com |
| Web based | ||
| Genome Biology | Bioarray software environment | Genomebiology.com/2002/3 |
| AMADA | Analysing microarray data | Web.hku.hk/xxia/software |
| Albert Einstein College of Medicine | GNU and GPL scatterplots | biotech.aecon.yu.edu |
| Ontario Cancer Institute | Microarray database | www.uhnres.utoronto.ca/microarray |
| European Bioinformatics Institute | ArrayExpress | www.ebi.ac.uk/arrayexpress |
| National Center Biotechnology Information NIH | Gene expression omnibus (GEO) | ncbi.nlm.nih.gov/geo |
| Microarray Gene Expression Data Society | MGED | www.mged.org |
| MIT Department of Biology | Microarray scanning | Web.mit.edu/biology/AbCam |
| Spotfire | Array explorer | www.spotfire.com |