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Mutations in the long QT gene, KCNQ1, are an uncommon cause of atrial fibrillation
  1. P T Ellinor2,
  2. R K Moore2,
  3. K K Patton2,
  4. J N Ruskin2,
  5. M R Pollak1,
  6. C A MacRae2
  1. 1Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, USA
  2. 2Cardiovascular Research Center and Cardiac Arrhythmia Service Massachusetts General Hospital, Boston, Massachusetts, USA
  1. Correspondence to:
    Dr Calum A MacRae
    Cardiovascular Research Center, 149 13th Street, 4th Floor Charlestown, MA 02129, USA;

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Atrial fibrillation (AF) is the most common clinical arrhythmia and a major source of morbidity and mortality.1 The underlying mechanisms for AF are highly heterogeneous and often related to associated structural heart disease.2 However, in several large studies 10–30% of subjects have no obvious heart disease, and are labelled as primary or lone AF.1

The identification of extended families with lone AF, and the mapping of discrete genetic loci in such families, raises the possibility that the heritable predisposition to this form of the arrhythmia is accessible.3,4 Recently, the first gene for an inherited form of AF was identified in a family with autosomal dominant transmission.5 A mutation was found in the first transmembrane spanning domain of the potassium channel gene, KCNQ1, resulting in serine-glycine substitution (S140G). Mutations in other residues throughout this gene cause long QT syndrome type 1 (LQT1). Co-expression of the S140G mutant allele with KCNE1 in cells results in a gain of function with increased current density, and an alteration of channel activation and inactivation. These observations contrast with the reduction in current density seen with LQT1 associated mutations. The unique phenotype associated with this activating mutation includes persistent AF and, surprisingly, QT prolongation. This paradoxical result may reflect chamber specific effects of the mutation, differential imprinting of the gene in atrium and ventricle, or coupling of the channel with different partner proteins, but emphasises that our understanding of repolarisation is incomplete.

The heritable contribution to the majority of lone AF cases is less clear. Given the importance of AF we sought to determine whether mutations in KCNQ1 play any role in more typical forms of this arrhythmia.


Serial subjects with lone AF referred to the arrhythmia service were enrolled between 1 June 2001 and 16 December 2002. Inclusion criteria were ECG documented AF, and an age ⩽ 65 years. The exclusion criteria were: structural heart disease on echocardiography, a history of hypertension, rheumatic heart disease, hyperthyroidism, myocardial infarction, or congestive heart failure.

Each subject underwent a physical examination and a standardised interview to identify past medical conditions, medications, symptoms, and possible triggers for initiation of AF. All subjects were evaluated by 12 lead ECG, echocardiogram, and a blood sample for DNA analysis was obtained.

Oligonucleotide primers for polymerase chain reaction (PCR) amplification of the coding region of KCNQ1 (available on request) were designed for exons 1A, 1B, and 2–15 using the known cDNA (NM 000218) and genomic sequence.

PCR was performed under standard conditions and after determination of the melting profile, amplicons were analysed for mutations using denaturing high performance liquid chromatography (DHPLC). The sensitivity of DHPLC in the context of the KCNQ1 gene, estimated by direct sequencing, was over 98%. Samples were initially screened by DHPLC, and positive amplicons were subsequently sequenced using the dye terminator method on an ABI fluorescent sequencer. Exon 1, which contains the previously reported S140G mutation, was sequenced in all 141 subjects. Statistical analyses were performed using STATA version 8.0.


One hundred and forty one unrelated study subjects were enrolled. The mean age at onset of AF was 45 years, and the mean age at enrolment was 54 years. All study subjects presented initially with paroxysmal AF, and 15% have since progressed to persistent AF. The mean resting heart rate and systolic and diastolic blood pressure were normal at enrolment.

The ECGs of the study subjects were notable for a normal mean PR (175.8 ms; 34), QRS (92.0 ms; 12) and QT (402.8 ms; 46) intervals. Eighteen of the study subjects (12.8%), of whom 15 were on flecainide, were found to have a QTc of greater than 450 ms. Echocardiography of the study cohort revealed a mean left atrial size at the upper limits of normal (38.8 (6.4) mm) and a normal left ventricular ejection fraction (0.62 (6.6)).

The coding sequence of KCNQ1 was screened for mutations using a combination of DHPLC and direct sequencing. While 15 polymorphisms were identified, no disease causing mutations were found (table 1). None of these polymorphisms result in changes in protein sequence, and three of the polymorphisms have been described previously.

Table 1

 Polymorphisms observed in KCNQ1


To date little attention has focused on the relation between AF and prolongation of the QT interval. Maintenance of AF is dependent on vagal stimulation in multiple model systems, and this dependence is thought to reflect the role of dispersion of refractoriness in the sustained propagation of electrical rotors within the atria.2 Atrial repolarisation has not been extensively studied in the context of long QT syndrome, but in at least one form of the disorder abnormalities of atrial electrophysiology have been documented. In long QT syndrome type 4 (LQT4), caused by mutations in the β-ankyrin gene, affected family members exhibit not only typical ventricular repolarisation abnormalities, but also sinoatrial dysfunction and AF. Recently, Chen and colleagues identified an unusual mutation in the LQT1 potassium channel gene, KCNQ1, that resulted in very early onset AF and long QT syndrome.5 These findings, coupled with the variable sensitivity of the surface ECG in inherited repolarisation disorders, and the identification of a sizeable proportion of our cohort with prolongation of the QT interval, led us to investigate a role for mutations in the KCNQ1 gene in lone AF probands.

Using DHPLC screening and direct sequencing, we found no evidence of KCNQ1 mutations in 141 unrelated individuals with lone AF. These data effectively exclude KCNQ1 mutations as a common cause of AF, and suggest that those families that do have mutations at this locus are unlikely to exhibit a typical lone AF phenotype. Any QT prolongation observed in our study cohort appears to be related to the use of antiarrhythmic medications rather than an underlying genetic predisposition.

Our findings further support the need for systematic genetic studies. This cohort was derived from referrals to an academic medical centre and is largely of Northern European descent, thus may not be reflective of all cohorts with lone AF. Eventually, the identification of the causative genes at previously described genetic loci will elucidate the pathophysiology of this morbid condition.3,4


This project is supported by an NIH award to Dr Ellinor (HL71632).


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