[HTML][HTML] Recommendations for evaluation of computational methods
AN Jain, A Nicholls - Journal of computer-aided molecular design, 2008 - Springer
The field of computational chemistry, particularly as applied to drug design, has become
increasingly important in terms of the practical application of predictive modeling to …
increasingly important in terms of the practical application of predictive modeling to …
Scoring functions for protein-ligand docking
AN Jain - Current Protein and Peptide Science, 2006 - ingentaconnect.com
Virtual screening by molecular docking has become established as a method for drug lead
discovery and optimization. All docking algorithms make use of a scoring function in …
discovery and optimization. All docking algorithms make use of a scoring function in …
[HTML][HTML] IL-1 receptor-associated kinase signaling and its role in inflammation, cancer progression, and therapy resistance
A Jain, S Kaczanowska, E Davila - Frontiers in immunology, 2014 - frontiersin.org
Chronic inflammation has long been associated with the development of cancer. Among the
various signaling pathways within cancer cells that can incite the expression of inflammatory …
various signaling pathways within cancer cells that can incite the expression of inflammatory …
Denoising diffusion probabilistic models
We present high quality image synthesis results using diffusion probabilistic models, a class
of latent variable models inspired by considerations from nonequilibrium thermodynamics …
of latent variable models inspired by considerations from nonequilibrium thermodynamics …
Dreamfusion: Text-to-3d using 2d diffusion
Recent breakthroughs in text-to-image synthesis have been driven by diffusion models
trained on billions of image-text pairs. Adapting this approach to 3D synthesis would require …
trained on billions of image-text pairs. Adapting this approach to 3D synthesis would require …
Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine
AN Jain - Journal of medicinal chemistry, 2003 - ACS Publications
Surflex is a fully automatic flexible molecular docking algorithm that combines the scoring
function from the Hammerhead docking system with a search engine that relies on a surface …
function from the Hammerhead docking system with a search engine that relies on a surface …
[PDF][PDF] Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
K Chin, S DeVries, J Fridlyand, PT Spellman… - Cancer cell, 2006 - cell.com
This study explores the roles of genome copy number abnormalities (CNAs) in breast cancer
pathophysiology by identifying associations between recurrent CNAs, gene expression, and …
pathophysiology by identifying associations between recurrent CNAs, gene expression, and …
Assembly of microarrays for genome-wide measurement of DNA copy number
AM Snijders, N Nowak, R Segraves, S Blackwood… - Nature …, 2001 - nature.com
We have assembled arrays of approximately 2,400 BAC clones for measurement of DNA
copy number across the human genome. The arrays provide precise measurement (sd of …
copy number across the human genome. The arrays provide precise measurement (sd of …
Zero-shot text-guided object generation with dream fields
We combine neural rendering with multi-modal image and text representations to synthesize
diverse 3D objects solely from natural language descriptions. Our method, Dream Fields …
diverse 3D objects solely from natural language descriptions. Our method, Dream Fields …
Endovascular ultrasound renal denervation to treat hypertension (RADIANCE-HTN SOLO): a multicentre, international, single-blind, randomised, sham-controlled trial
Background Early studies suggest that radiofrequency-based renal denervation reduces
blood pressure in patients with moderate hypertension. We investigated whether an …
blood pressure in patients with moderate hypertension. We investigated whether an …